README - Files descriptions for the versions of EL10 genome sequences. 

EL10.1
	custom_repeat_library_for_sbj_80x_BioNano.fasta
	EL10.1.contig_names.history.txt 
	EL10.1_final_cDNA.fasta
	EL10.1_final_proteins.fasta
	EL10.1_final_proteins.names.txt  
	EL10.1_final_scaffolds.fasta 
	geneList.key.out_trinotate.txt 
	intersect_stringtieTranscripts_EL10Genes.txt 
	LTR_retriever.EL10.1_LTR.out 
	LTR_retriever.EL10.1_LTRanno.gff 
	LTR_retriever.EL10.1_LTRlib.fa  
	Mercator4.species_comparison.tsv 
	Mercator4_EL10.results.txt 
	Stringtie_EL10Gene_key.txt 
	sugarbeet_SMRThmms_noSingleExonAndSMRT_maxPfam.txt 
	tandem_repeats.EL10-1_chr_scaffold.fasta.2.7.7.80.10.50.500.dat 

EL10.2_1
	EL10_2_1.fa – Genome sequence Dovetail (unpolished)
	EL10_2_1.liftoff.gff – Annotations of EL10.2_1 derived from EL10.1 using liftoff

EL10.2_2
	EL10_2_2.cdna.fa - Protein sequences from EL10.1
	EL10_2_2.fa -Genome sequence polished using POLCA
	EL10_2_2_JGI.allTrs.cds.fa – CDNA sequences derived from JGI annotation
	EL10_2_2_JGI.allTrs.pep.fa -protein sequences derived from JGI annotation
	EL10_2_2_JGI.gene_exons.gff3 -JGI annotation file (GFF3)
	EL10_2_2_JGIgene.functions.txt -JGI annotation file (supplemental)
	EL10_2_2_JGItranscript.functions.txt - JGI annotation file (supplemental)
	EL10_2_2.liftoff.gff – Annotations of EL10.2_2 derived from EL10.1 using liftoff
	EL10_2_2.prot.fa – protein sequences from EL10.1
	EL10_2_final_transcriptome.fasta – transcriptome data used for annotation

EL10.1
	custom_repeat_library_for_sbj_80x_BioNano.fasta
	EL10.1.contig_names.history.txt 
	EL10.1_final_cDNA.fasta
	EL10.1_final_proteins.fasta
	EL10.1_final_proteins.names.txt  
	EL10.1_final_scaffolds.fasta 
	geneList.key.out_trinotate.txt 
	intersect_stringtieTranscripts_EL10Genes.txt 
	LTR_retriever.EL10.1_LTR.out 
	LTR_retriever.EL10.1_LTRanno.gff 
	LTR_retriever.EL10.1_LTRlib.fa  
	Mercator4.species_comparison.tsv 
	Mercator4_EL10.results.txt 
	Stringtie_EL10Gene_key.txt 
	sugarbeet_SMRThmms_noSingleExonAndSMRT_maxPfam.txt 
	tandem_repeats.EL10-1_chr_scaffold.fasta.2.7.7.80.10.50.500.dat 

EL10.2_1
	EL10_2_1.fa – Genome sequence Dovetail (unpolished)
	EL10_2_1.liftoff.gff – Annotations of EL10.2_1 derived from EL10.1 using liftoff

EL10.2_2
	EL10_2_2.cdna.fa - Protein sequences from EL10.1
	EL10_2_2.fa -Genome sequence polished using POLCA
	EL10_2_2_JGI.allTrs.cds.fa – CDNA sequences derived from JGI annotation
	EL10_2_2_JGI.allTrs.pep.fa -protein sequences derived from JGI annotation
	EL10_2_2_JGI.gene_exons.gff3 -JGI annotation file (GFF3)
	EL10_2_2_JGIgene.functions.txt -JGI annotation file (supplemental)
	EL10_2_2_JGItranscript.functions.txt - JGI annotation file (supplemental)
	EL10_2_2.liftoff.gff – Annotations of EL10.2_2 derived from EL10.1 using liftoff
	EL10_2_2.prot.fa – protein sequences from EL10.1
	EL10_2_final_transcriptome.fasta – transcriptome data used for annotation